PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 657aa    MW: 73059.6 Da    PI: 8.3614
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-9170PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-084087344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44
                      W t+E++ll+ av+++ +++W++I++++         +t+ +c +++
        Lsa016018 40 VWGTWEELLLAYAVNRYDTKSWDSISSELRkrssapILLTPHHCEEKY 87
                     6*****************************777777446777777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00763793IPR001005SANT/Myb domain
PfamPF002491.4E-64087IPR001005SANT/Myb domain
CDDcd001678.90E-44191No hitNo description
SMARTSM002971.7E-7333441IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-10341440IPR001487Bromodomain
SuperFamilySSF473703.4E-13342438IPR001487Bromodomain
CDDcd043693.14E-12344436No hitNo description
PROSITE profilePS5001410.305359422IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAVEEINIEK KTERNPSAMT KSDQEREPED TKGSPPATTV WGTWEELLLA YAVNRYDTKS  60
WDSISSELRK RSSAPILLTP HHCEEKYGEL KRRFNQSDED DVEMDDGSDT TTTTTAIPWL  120
DELRKLRVLE LQRELQNYDL YISSLQLKVK KLTEESEKTG GEPKKKSDLG QRNEEIEIKK  180
AEEEAKNETP EPVVSGDEDS DRDNQSVNGS NGNLETGVEK SENENENENE NENENEASPV  240
GTGDEKPESA ALSPVREEDS CNGRPEGKEE PVKTEPDGEA SEAPESIAES KSEGTTKENS  300
DVQSSASKSK KERVDRMRRG SIKGDERENE DQSTDSIPVR SLPLVDFLHK LHKLGSALFD  360
RRLDRQEKLR YKNLIRQHID YEILQTRLKE GWYSDGNDKF FRDLLLLVNN TRIFFPKDSP  420
ESTAATDLQK LILKEMTSKK KQKSDSKSAD KQNSSSKPKI PPDSSLLLKP KLTGPIVVCR  480
KRSSITGKGD RRKEQPDLKK GKNPSSSQDH GKPSSANNEA SDTKNEKKKK LTEAEEKKQS  540
AAKFLNRMKR TSSNSNEPLN SLKSNSVGGG GGYDSDSKEQ KRGGGSNKGG GGGGGEGKKD  600
QGSKKKGKEQ GSPAKRSVGR PPKRAAAPPQ VLGKRNRESG ESAETLGSKQ TKKRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A103Y6M70.0A0A103Y6M7_CYNCS; Homeodomain-like protein